CLI is great when you know what command to run. MCP is great when the agent decides what to run - it discovers tools without you scripting the interaction.
The real problem isn't MCP vs CLI, it's that MCP originally loaded every tool definition into context upfront. A typical multi-server setup (GitHub, Slack, Sentry, Grafana, Splunk) consumes ~55K tokens in definitions before Claude does any work. Tool selection accuracy also degrades past 30-50 tools.
Anthropic's Tool Search fixes this with per-tool lazy loading - tools are defined with defer_loading: true, Claude only sees a search index, and full schemas load on demand for the 3-5 tools actually needed. 85% token reduction. The original "everything upfront" design was wrong, but the protocol is catching up.
The real problem isn't MCP vs CLI, it's that MCP originally loaded every tool definition into context upfront. A typical multi-server setup (GitHub, Slack, Sentry, Grafana, Splunk) consumes ~55K tokens in definitions before Claude does any work. Tool selection accuracy also degrades past 30-50 tools.
Anthropic's Tool Search fixes this with per-tool lazy loading - tools are defined with defer_loading: true, Claude only sees a search index, and full schemas load on demand for the 3-5 tools actually needed. 85% token reduction. The original "everything upfront" design was wrong, but the protocol is catching up.